Measuring cells in phytoplankton images

Year: 2015

Authors: Mirto M., Conte L., Aloisio G., Distante C., Vecchio P., De Giovanni A.

Autors Affiliation: Euromediterranean Ctr Climate Change CMCC, I-73100 Lecce, Italy;‎ CNR INO, I-73010 Arnesano, Italy;‎ Univ Salento, I-73100 Lecce, Italy

Abstract: Phytoplankton is a quality element for determining the ecological status of transitional water ecosystems. In routine analysis, bio-volume and surface area of phytoplankton are the most studied morphometric descriptors. Bio-volume can be estimated by comparing the algae with similar three-dimensional geometric forms and determining their volume, by measuring the linear dimensions required for its calculation with images acquired by an inverse microscope. Software such as LUCIA-G (Laboratory Imaging) determines, in an automatic way, only the linear dimensions of simple forms such as circle or ellipse, approximated at a given algae, whereas complex forms require the intervention of an operator by selecting the start and end points of linear dimensions with obvious introduction of human error. In this paper, we propose a novel methodology for detecting phytoplankton algae and by measuring linear dimensions of 42 geometrical forms to automatically compute their area and bio-volume, that has been implemented in a novel software, named LUISA, for image analysis.

Conference title:

KeyWords: Detection of algae; Image analysis; morphometric descriptors; algal bio-volume; geometric model; phytoplankton; PCA; SIFT; RANSAC; Hu’s moments