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Author: Silvestri Ludovico Category: Papers Journals 

1) 3D molecular phenotyping of cleared human brain tissues with light-sheet fluorescence microscopy in COMMUNICATIONS BIOLOGY
By: Pesce Luca; Scardigli Marina; Gavryusev Vladislav; Laurino Annunziatina; Mazzamuto Giacomo; Brady Niamh; Sancataldo Giuseppe; Silvestri Ludovico; Destrieux Christophe; Hof Patrick R.; Costantini Irene; Pavone Francesco S. Year: 2022 (Cit.: 0 DOI: 10.1038/s42003-022-03390-0)

2) Fast whole-brain imaging of seizures in zebrafish larvae by two-photon light-sheet microscopy in BIOMEDICAL OPTICS EXPRESS
By: De Vito G., Turrini L., Müllenbroich C., Ricci P., Sancataldo G., Mazzamuto G., Tiso N., Sacconi L., Fanelli D., Silvestri L., Vanzi F., Pavone FS. Year: 2022 (Cit.: 11 DOI: 10.1364/BOE.434146)

3) Autofluorescence enhancement for label‑free imaging of myelinated fibers in mammalian brains in SCIENTIFIC REPORTS
By: Costantini I., Baria E., Sorelli M., Matuschke F., Giardini F., Menzel M., Mazzamuto G., Silvestri L., Cicchi R., Amunts K., Axer M., Pavone F.S. Year: 2021 (Cit.: 17 DOI: 10.1038/s41598-021-86092-7)

4) Comparison of Different Tissue Clearing Methods for Three-Dimensional Reconstruction of Human Brain Cellular Anatomy Using Advanced Imaging Techniques in FRONTIERS IN NEUROANATOMY
By: Scardigli M., Pesce L., Brady N., Mazzamuto G., Gavryusev V., Silvestri L., Hof PR., Destrieux C., Costantini I., Pavone FS. Year: 2021 (Cit.: 0 DOI: 10.3389/fnana.2021.752234)

5) Large-scale, cell-resolution volumetric mapping allows layer-specific investigation of human brain cytoarchitecture in BIOMEDICAL OPTICS EXPRESS
By: Costantini I., Mazzamuto G., Roffilli M., Laurino A., Castelli FM., Neri M., Lughi G., Simonetto A., Lazzeri E., Pesce L., Destrieux C., Silvestri L., Conti V., Guerrini R., Pavone FS Year: 2021 (Cit.: 13 DOI: 10.1364/BOE.415555)

6) Universal autofocus for quantitative volumetric microscopy of whole mouse brains in NATURE METHODS
By: Silvestri L., Mullenbroich MC., Costantini I., Di Giovanna AP., Mazzamuto G., Franceschini A., Kutra D., Kreshuk A., Checcucci C., Toresano LO., Frasconi P., Sacconi L., Pavone FS. Year: 2021 (Cit.: 27 DOI: 10.1038/s41592-021-01208-1)

7) Inferring network structure and local dynamics from neuronal patterns with quenched disorder in CHAOS SOLITONS & FRACTALS
By: Adam I., Cecchini G., Fanelli D., Kreuz T., Livi R., di Volo M., Mascaro Allegra AL., Conti E., Scaglione A., Silvestri L., Pavone FS. Year: 2020 (Cit.: 0 DOI: 10.1016/j.chaos.2020.110235)

8) Effects of excitation light polarization on fluorescence emission in two-photon light-sheet microscopy in BIOMEDICAL OPTICS EXPRESS
By: de Vito G., Ricci P., Turrini L., Gavryusev V., Mullenbroich C., Tiso N., Vanzi F., Silvestri L., Pavone FS. Year: 2020 (Cit.: 13 DOI: 10.1364/BOE.396388)

9) Fast multi-directional DSLM for confocal detection without striping artifacts in BIOMEDICAL OPTICS EXPRESS
By: Ricci P., Santacaldo G., Gavryusev V., Franceschini A., Mullenbroich MC., Silvestri L., Pavone FS. Year: 2020 (Cit.: 13 DOI: 10.1364/BOE.390916)

10) Dissecting Neuronal Activation on a Brain-Wide Scale With Immediate Early Genes in FRONTIERS IN NEUROSCIENCE
By: Franceschini A., Costantini I., Pavone FS., Silvestri L. Year: 2020 (Cit.: 26 DOI: 10.3389/fnins.2020.569517)

11) Toward a High-Resolution Reconstruction of 3D Nerve Fiber Architectures and Crossings in the Brain Using Light Scattering Measurements and Finite-Difference Time-Domain Simulations in PHYSICAL REVIEW X
By: Menzel M., Axer M., De Raedt H., Costantini I., Silvestri L., Pavone FS., Amunts K., Amunts K., Michielsen K. Year: 2020 (Cit.: 17 DOI: 10.1103/PhysRevX.10.021002)

12) In-vivo and ex-vivo optical clearing methods for biological tissues: review in BIOMEDICAL OPTICS EXPRESS
By: Costantini I., Cicchi R., Silvestri L., Vanzi F., Pavone F.S. Year: 2019 (Cit.: 107 DOI: 10.1364/BOE.10.005251)

13) Tailored Sample Mounting for Light-Sheet Fluorescence Microscopy of Clarified Specimens by Polydimethylsiloxane Casting in FRONTIERS IN NEUROANATOMY
By: Di Giovanna AP., Credi C., Franceschini A., Muellenbroich MC., Silvestri L., Pavone FS. Year: 2019 (Cit.: 8 DOI: 10.3389/fnana.2019.00035)

14) Dual-beam confocal light-sheet microscopy via flexible acousto-optic deflector in JOURNAL OF BIOMEDICAL OPTICS
By: Gavryusev V., Sancataldo G., Ricci P., Montalbano A., Fornetto C., Turrini L., Laurino A., Pesce L., de Vito G., Tiso N., Vanzi F., Silvestri L., Pavone FS. Year: 2019 (Cit.: 22 DOI: 10.1117/1.JBO.24.10.106504)

15) Advanced fluorescence microscopy for in vivo imaging of neuronal activity in OPTICA
By: Sancataldo Giuseppe; Silvestri Ludovico; Mascaro Anna Letizia Allegra; Sacconi Leonardo; Pavone Francesco Saverio Year: 2019 (Cit.: 26 DOI: 10.1364/OPTICA.6.000758)

16) Whole-Brain Vasculature Reconstruction at the Single Capillary Level (vol 8, 12573, 2018) in SCIENTIFIC REPORTS
By: Di Giovanna AP., Tibo A., Silvestri L., Mullenbroich MC., Costantini I., Allegra Mascaro AL., Sacconi L., Frasconi P., Pavone FS. Year: 2019 (Cit.: 0 DOI: 10.1038/s41598-019-42216-8)

17) Bessel Beam Illumination Reduces Random and Systematic Errors in Quantitative Functional Studies Using Light-Sheet Microscopy (vol 12, 315, 2018) in FRONTIERS IN CELLULAR NEUROSCIENCE
By: Muellenbroich MC., Turrini L., Silvestri L., Alterini T., Gheisari A., Tiso N., Vanzi F., Sacconi L., Pavone FS. Year: 2019 (Cit.: 1 DOI: 10.3389/fncel.2019.00025)

18) Flexible Multi-Beam Light-Sheet Fluorescence Microscope for Live Imaging Without Striping Artifacts in FRONTIERS IN NEUROANATOMY
By: Sancataldo G., Gavryusev V., de Vito G., Turrini L., Locatelli M., Fornetto C., Tiso N., Vanzi F., Silvestri L., Pavone FS.
Year: 2019 (Cit.: 20 DOI: 10.3389/fnana.2019.00007)

19) Reply to Entcheva: The impact of T-tubules on action potential propagation in cardiac tissue in PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
By: Scardigli M., Crocini C., Ferrantini C., Gabbrielli T., Silvestri L., Coppini R., Tesi C., Rog-Zielinska E. A., Kohl P., Cerbai E., Poggesi C., Pavone F.S., Sacconi L. Year: 2018 (Cit.: 0 DOI: 10.1073/pnas.1720253115)

20) Confocal multispot microscope for fast and deep imaging in semicleared tissues in JOURNAL OF BIOMEDICAL OPTICS
By: Adam M.P., Muellenbroich M.C., Di Giovanna A.P., Alfieri D., Silvestri L., Sacconi L., Pavone F.S. Year: 2018 (Cit.: 1 DOI: 10.1117/1.JBO.23.2.020503)

21) Whole-Brain Vasculature Reconstruction at the Single Capillary Level in SCIENTIFIC REPORTS
By: Di Giovanna A.P., Tibo A., Silvestri L., Muellenbroich M.C., Costantini I., Allegra Mascaro A.L., Sacconi L., Frasconi P., Pavone F.S. Year: 2018 (Cit.: 77 DOI: 10.1038/s41598-018-30533-3)

22) Bessel Beam Illumination Reduces Random and Systematic Errors in Quantitative Functional Studies Using Light-Sheet Microscopy in FRONTIERS IN CELLULAR NEUROSCIENCE
By: Muellenbroich M. C., Turrini L., Silvestri L., Alterini T., Gheisari A., Vanzi F., Sacconi L., Pavone F. S. Year: 2018 (Cit.: 28 DOI: 10.3389/fncel.2018.00315)

23) High-fidelity imaging in brain-wide structural studies using light-sheet microscopy in ENEURO
By: Müllenbroich M.C., Silvestri L., Di Giovanna A.P., Mazzamuto G., Costantini I., Sacconi L., Pavone F.S. Year: 2018 (Cit.: 11 DOI: 10.1523/ENEURO.0124-18.2018)

24) Quantitative assessment of passive electrical properties of the cardiac T-tubular system by FRAP microscopy in PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
By: Scardigli M., Crocini C., Ferrantini C., Gabbrielli T., Silvestri L., Coppini R., Tesi C., Rog-Zielinska E., Kohl P., Cerbai E., Poggesi C., Pavone F. S., Sacconi L. Year: 2017 (Cit.: 31 DOI: 10.1073/pnas.1702188114)

25) Multi-Modal Optical Imaging of the Cerebellum in Animals in CEREBELLUM
By: Allegra Mascaro A.L., Sacconi L., Silvestri. L., Knott G., Pavone F.S. Year: 2016 (Cit.: 0 DOI: 10.1007/s12311-015-0730-4)

26) Clearing of fixed tissue: a review from a microscopist´s perspective in JOURNAL OF BIOMEDICAL OPTICS
By: Silvestri L., Costantini I., Sacconi L., Pavone F.S. Year: 2016 (Cit.: 103 DOI: 10.1117/1.JBO.21.8.081205)

27) Towards a comprehensive understanding of brain machinery by correlative microscopy in JOURNAL OF BIOMEDICAL OPTICS
By: Allegra Mascaro A. M., Silvestri L., Sacconi L., Pavone F. S. Year: 2015 (Cit.: 11 DOI: 10.1117/1.JBO.20.6.061105)

28) A versatile clearing agent for multi-modal brain imaging in SCIENTIFIC REPORTS
By: Costantini I., Ghobril J.P., Di Giovanna A.P., Allegra Mascaro A. L., Silvestri L., Müllenbroich M.C., Onofri L., Conti V., Vanzi F., Sacconi L., Guerrini R., Markram H., Iannello G., Pavone F.S. Year: 2015 (Cit.: 185 DOI: 10.1038/srep09808)

29) Comprehensive optical and data management infrastructure for high-throughput light-sheet microscopy of whole mouse brains in NEUROPHOTONICS
By: Muellenbroich M.C., Silvestri L., Onofri L., Costantini I., Van’t Hoff M., Sacconi L., Iannello G., Pavone F.S. Year: 2015 (Cit.: 17 DOI: 10.1117/1.NPh.2.4.041404)

30) Quantitative neuroanatomy of all Purkinje cells with light sheet microscopy and high-throughput image analysis in FRONTIERS IN NEUROANATOMY
By: Silvestri L., Paciscopi M., Soda P., Biamonte F., Iannello G., Frasconi P., Pavone F. S. Year: 2015 (Cit.: 30 DOI: 10.3389/fnana.2015.00068)

31) Correlative two-photon and light sheet microscopy in METHODS
By: Silvestri L., Allegra Mascaro A. M., Costantini I., Sacconi L., Pavone F. S. Year: 2014 (Cit.: 26 DOI: 10.1016/j.ymeth.2013.06.013)

32) Correcting Spherical Aberrations in Confocal Light Sheet Microscopy: A Theoretical Study in MICROSCOPY RESEARCH AND TECHNIQUE
By: Silvestri L., Sacconi L., Pavone F.S. Year: 2014 (Cit.: 13 DOI: 10.1002/jemt.22330)

33) Large-scale automated identification of mouse brain cells in confocal light sheet microscopy images in BIOINFORMATICS
By: Frasconi P., Silvestri L., Soda P., Cortini R., Pavone F. S., Iannello G. Year: 2014 (Cit.: 45 DOI: 10.1093/bioinformatics/btu469)

34) Breakthroughs in Photonics 2012: Nonlinear Laser Imaging for Neuroscience in IEEE PHOTONICS JOURNAL
By: Allegra Mascaro A. L., Silvestri L., Sacconi L., Pavone FS. Year: 2013 (Cit.: 2 DOI: 10.1109/JPHOT.2013.2250941)

35) Advanced optical techniques to explore brain structure and function in JOURNAL OF INNOVATIVE OPTICAL HEALTH SCIENCES
By: Silvestri L., Allegra Mascaro A.L., Lotti J., Sacconi L., Pavone FS. Year: 2013 (Cit.: 19 DOI: 10.1142/S1793545812300029)

36) The connectomics challenge in FUNCTIONAL NEUROLOGY
By: Silvestri L., Sacconi L., Pavone FS. Year: 2013 (Cit.: 13 DOI: 10.11138/FNeur/2013.28.3.167)

37) Micron-scale Resolution Optical Tomography of Entire Mouse Brains with Confocal Light Sheet Microscopy in JOVE-JOURNAL OF VISUALIZED EXPERIMENTS
By: Silvestri L., Bria A., Costantini I., Sacconi L., Peng H., Iannello G., Pavone F.S. Year: 2013 (Cit.: 17 DOI: 10.3791/50696)

38) Confocal light sheet microscopy: micron-scale neuroanatomy of the entire mouse brain in OPTICS EXPRESS
By: Silvestri L., Bria A., Sacconi L., Iannello G., Pavone FS. Year: 2012 (Cit.: 183 DOI: 10.1364/OE.20.020582)

39) Event-driven power-law relaxations in weak turbulence in PHYSICAL REVIEW LETTERS
By: Silvestri L., Fronzoni L., Grigolini P., Allegrini P. Year: 2009 (Cit.: 55 DOI: 10.1103/PhysRevLett.102.014502)

40) Experimental Quenching of Harmonic Stimuli: Universality of Linear Response Theory in PHYSICAL REVIEW LETTERS
By: Allegrini P., Bologna M., Fronzoni L., Grigolini P., Silvestri L. Year: 2009 (Cit.: 31 DOI: 10.1103/PhysRevLett.103.030602)